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Ciliophora of the US-NE-LME

There are 27 species of Ciliophora that are commonly found in the US-NE-LME.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A		 All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 27 total species, 2 of these species (7%) have COI barcodes (from this or any ocean).
  • There are a total of 22 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
    • MODE
    B    		 Regional COI barcodes for this taxa group (includes only those collected in the US-NE-LME region):
  • Of the 27 total species, 0 of these species (0%) have US-NE-LME-collected COI barcodes.
  • There are a total of 0 "US-NE-LME-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
    • Uncoded
    Species    		 Of the 27 total species in this region, 25 species do not have any COI barcodes (from any region).

     Barcoding progress summary for the US-NE-LME region, out of a total of 27 possible species:
    • There are COI barcodes for 2 species ( 7% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
      •
    • There are 12S barcodes for 0 species ( 0% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 2 species ( 7% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 8 species ( 29% coverage ), of which 2 species have barcodes sampled inside this region ( 7% coverage ).
    • There are 28S barcodes for 4 species ( 14% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    MZGdb Data Download Options
    ---> CLICK HERE <---


    Change Region   [ ICES North Atlantic ] [ Baltic Sea ] [ Mediterranean Sea ]
          [ ICES western North Atlantic ] [ US-NE-LME ] [ CA-Scotian ] [ CA-GSL ] [ CA-Newfoundland-shelf ]
          [ ICES eastern North Atlantic ] [ Icelandic-Waters ] [ Faroe-Islands ] [ Norwegian-Sea ] [ Barents-Sea ] [ Celtic-Seas ] [ North-Sea ] [ Iberian-Shelf ]
    Table Viewing Options   [ Species-only Summary, sorted by name (default) ]   or   [ Full Taxonomic Hierarchy ]   or   [ flat-text file of sorted species names ]


    Ciliophora of the US-NE-LME
    Taxa Name

    		Taxa
    Level    		Barcode
    Data?    		Number of
    Barcodes
    from
    any ocean    		Number of
    Barcodes
    from this region    		Barcode Locations and
    Species Occurence Map    		MZGdb Atlas
    v2025-m03-01

    2025-May-05
      Acineta tuberosa Species
    (1)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2007307

    R:1:0:0:0
      Aspidisca hexeris Species
    (2)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2007532

    R:1:0:0:0
      Condylostoma patens Species
    (3)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2013522

    R:1:0:0:0
      Diophrys appendiculata Species
    (4)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 1
      12S = 0
      16S = 0
      18S = 0
      28S = 1
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2004985

    R:1:0:0:0
      Euplotes harpa Species
    (5)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 0
      12S = 0
      16S = 0
      18S = 8
      28S = 2
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2008770

    R:1:0:0:0
      Gymnodinioides inkystans Species
    (6)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2009165

    R:1:0:0:0
      Gymnodinioides pitelkae Species
    (7)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 0
      12S = 0
      16S = 0
      18S = 1
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2009168

    R:1:0:0:0
      Hyalophysa chattoni Species
    (8)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 0
      12S = 0
      16S = 0
      18S = 2
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2009466

    R:1:1:0:0
      Lacrymaria coronata Species
    (9)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2014818

    R:1:0:0:0
      Lagotia expansa Species
    (10)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2014907

    R:1:0:0:0
      Leegaardiella ovalis Species
    (11)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2014936

    R:1:0:0:0
      Leegaardiella sol Species
    (12)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2014937

    R:1:0:0:0
      Licnophora auerbachi Species
    (13)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2015023

    R:1:0:0:0
      Litonotus fasciola Species
    (14)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2015047

    R:1:0:0:0
      Mesodinium rubrum Species
    (15)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 0
      12S = 0
      16S = 5
      18S = 169
      28S = 163
    		   COI = 0
      12S = 0
      16S = 0
      18S = 1
      28S = 0
    		 accepted
    T2001094

    R:1:0:0:0
      Parafavella gigantea Species
    (16)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 21
      12S = 0
      16S = 0
      18S = 21
      28S = 21
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2000068

    R:1:0:0:0
      Pelagostrobilidium epacrum Species
    (17)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2010421

    R:1:0:0:0
      Psammomitra retractilis Species
    (18)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2010839

    R:1:0:0:0
      Rimostrombidium sphaericum Species
    (19)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2011100

    R:1:0:0:0
      Spathidiopsis buddenbrocki Species
    (20)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 0
      12S = 0
      16S = 0
      18S = 1
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 1
      28S = 0
    		 accepted
    T2021999

    R:1:0:0:0
      Strombidium minor Species
    (21)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2011475

    R:1:0:0:0
      Tiarina fusus Species
    (22)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2004034

    R:1:0:0:0
      Tintinnopsis campanula Species
    (23)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2001010

    R:1:0:0:0
      Tintinnopsis cylindrica Species
    (24)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 0
      12S = 0
      16S = 0
      18S = 3
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2004359

    R:1:0:0:0
      Trachelocerca phoenicopterus Species
    (25)    		 No barcodes?   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2016679

    R:1:1:0:0
      Uronychia transfuga Species
    (26)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 0
      12S = 0
      16S = 1
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2011993

    R:1:0:0:0
      Zoothamnium pelagicum Species
    (27)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 0
      12S = 0
      16S = 0
      18S = 1
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 no map accepted
    T2000803

    R:1:0:0:0
    MZGdb Atlas [ database-version = v2025-m03-01 ];   html-date = 2025-May-05









    Mon May 5 10:32:34 PM EDT 2025